Biometrics, Quantitative Genetics and Data Management Training for Breeding Informatics Working Group A: Senegal 2 – 6 September 2024

Program

Day 1: Moderator Dr Cyril Diatta
2 September 2024 (Monday)
From	To		Session		Instructors
8:30 AM	9:00 AM	Meeting Check-in		Mouhamed, Kim
9:00 AM	9:20 AM	Welcome Remarks		CERAAS Director Dr Aliou Faye, ADCIN/CIMMYT regional coordinator Dr Baloua Nebie, ABEE coordinator Dr Ousmane Ndoye, ILCI-CIWA coordinator Mme Mareme Niang Belko
9:20 AM	9:25 AM	Introduction & Objectives Introduction		Aissatou
9:25 AM	9:45 AM	Participants introduction; Network Partner’s Expectations from Meeting		All
9:45 AM	10:15 AM	Agro-Physiological Characterization of abiotic stress in Crops		Yves Emendack
10:15 AM	10:30 AM	Coffee Break and Group Photo		Kim/ Aboubakr
10:30 AM	11:30 AM	Breeding objectives of a Breeding Program & Data Driven Decisions		Abhishek
11:30 AM	1:00 PM	Breeders Equation, Genetic Gains, Use of Data Management Systems and Informatics		Abhishek
1:00 PM	2:00 PM	Lunch		Hotel
2:00 PM	2:30 PM	Digital Breeding Philosophy		Abhishek
2:30 PM	3:30 PM	Introduction to Advanced Experimental Designs Complete & Incomplete Block Design Row Column Design Augmented Block Design P-rep Design Sparse Design		Abhishek, Diariétou
3:30 PM	4:00 PM	Coffee Break
4:00 PM	4:30 PM	· Designing of Experimental Field Trials		Abhishek, Diariétou
4:30 PM	5:00 PM	General Discussion		All

Day 2: Moderator Dr Richard Oteng-Frimpong
3 September 2024 (Tuesday)
From	To	Session
8:30 AM	8:45 AM	Recap from Day 1
8:45 AM	9:45 AM	Understanding Fixed and Mixed Effect Models Designing MLT, understanding and exploiting GxE Different Covariance Structures, Genetic and Phenotypic Correlations	Abhishek, Diariétou
9:45 AM	10:45 AM	· Introduction to Analytical Frameworks and Tools · Result Interpretation of Mixed Models / ANOVA for Selection in standard templates	Abhishek, Diariétou
10:45 AM	11:15 AM	Coffee Break
11:15 AM	1:00 PM	BMS Introduction Germplasm Manager Study Management in BMS Genotyping sample procedure in BMS Data QC, Visualization and Data Query in BMS Discussion regarding BMS in the future	Abhishek, Hermann
1:00 PM	2:00 PM	Lunch	Hotel
2:00 PM	3:30 PM	EBS Demo	Abhishek, Hermann
3:30 PM	4:00 PM	Coffee Break
4:00 PM	5:00 PM	EBS Demo	Abhishk, Hermann

Day 3: Moderator Dr Drabo Inoussa
4 September 2024 (Wednesday)
From	To	Session	Presenter
8:30 AM	8:45 AM	Recap from Day 2
8:45 AM	10:00 AM	EBS Demo and discussion on EBS in the future	Abhishek, Hermann
10:00 AM	10:30 AM	Coffee Break
10:30 AM	12:30 PM	Exploiting Genomic Data: QAQC, MAS	Mohan, Jacque
12:30 PM	1:00 PM	Exploiting Genomic Data: QAQC, MAS	Mohan, Jacque
1:00 PM	2:00 PM	Lunch	Hotel
2:00 PM	3:30 PM	Introduction to R and Advanced Data QC & Visualization – Data Summarization – Tabulation and Data Query – Finding Model Based Outliers – Ggplot2	Abhishek, Diariétou
3:30 PM	4:00 PM	Coffee Break
4:00 PM	5:30 PM	Continued…	Abhishek
Day 4: Moderator Mareme Niang Belko
5 September 2024 (Thursday)
From	To	Session		Presenter
8:30 AM	8:45 AM	Recap from Day 3
8:45 AM	10:15 AM	Overview of CGIAR Breeding Analytical Pipeline		Abhishek
10:15 AM	10:45 AM	Coffee Break
10:45 AM	1:00 PM	CGIAR Breeding Analytical Pipeline (Hands on)		Abhishek
1:00 PM	2:00 PM	Lunch		Hotel
2:00 PM	3:30 PM	CGIAR Breeding Analytical Pipeline (Hands on) Contd…		Abhishek
3:30 PM	4:00 PM	Coffee Break		Abhishek
4:00 PM	5:30 PM	Participant use CGIAR Breeding Pipeline with their own data		Abhishek

Day 5: Moderator Dr Issa Faye
6 September 2024 (Friday)
From	To	Session	Presenter
8:30 AM	8:45 AM	Recap from Day 4
8:45 AM	10:30 AM	Discussion on Genetic Gains Methods of Genetic Gains estimation Discussion on Check Strategy Some Practical Examples	Abhishek
10:30 AM	11:00 AM	Coffee Break
11:00 AM	12:00 PM	Use of Selection Indices	Abhishek
12:00 PM	1:00 PM	CGIAR Analytical Pipeline for Selection Indices and Genetic Gains	Abhishek
1:00 PM	2:30 PM	Lunch Hotel
2:30 PM	3:00 PM	Presentation from Participants on Data Analysis Done through CGIAR Analytical Pipeline	All
3:00 PM	3:30 PM	Continued…
3:30 PM	4:00 PM	Coffee Break
4:00 PM	4:30 PM	Feedback and Closure	All

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