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    Biometrics, Quantitative Genetics and Data Management Training for Breeding Informatics Working Group A: Senegal 2 – 6 September 2024

    by ISRA CERAAS,  0 Comments

     

       Program

       

      Day 1:  Moderator Dr Cyril Diatta
      2 September 2024 (Monday) 
      From  To  Session  Instructors  
      8:30 AM  9:00 AM Meeting Check-in  Mouhamed, Kim
      9:00 AM  9:20 AM Welcome Remarks CERAAS Director Dr Aliou Faye,

      ADCIN/CIMMYT regional coordinator Dr Baloua Nebie,

      ABEE coordinator Dr Ousmane Ndoye,

      ILCI-CIWA coordinator Mme Mareme Niang Belko
       9:20 AM  9:25 AM Introduction & Objectives Introduction  Aissatou
       9:25 AM   9:45 AM Participants introduction; Network Partner’s

      Expectations from Meeting

      		  All
      9:45 AM  10:15 AM Agro-Physiological Characterization of abiotic stress in Crops Yves Emendack
      10:15 AM  10:30 AM  Coffee Break and Group Photo   Kim/ Aboubakr
       10:30 AM   11:30 AM Breeding objectives of a Breeding Program & Data Driven Decisions  Abhishek
       11:30 AM   1:00 PM Breeders Equation, Genetic Gains, Use of Data Management Systems and Informatics  Abhishek
      1:00 PM  2:00 PM  Lunch   Hotel
       2:00 PM   2:30 PM Digital Breeding Philosophy  Abhishek
       

       

       

      2:30 PM 

      		  

       

       

      3:30 PM

      		 Introduction to Advanced Experimental Designs

      • Complete & Incomplete Block Design
      • Row Column Design
      • Augmented Block Design
      • P-rep Design
      • Sparse Design
      		  Abhishek, Diariétou
      3:30 PM  4:00 PM  Coffee Break 
      4:00 PM  4:30 PM ·       Designing of Experimental Field Trials  Abhishek, Diariétou
      4:30 PM  5:00 PM General Discussion All

       

       

       

       

       

       

       

      Day 2: Moderator Dr Richard Oteng-Frimpong
      3 September 2024 (Tuesday)
      From To Session  
      8:30 AM 8:45 AM Recap from Day 1  
      8:45 AM 9:45 AM
      • Understanding Fixed and Mixed Effect Models
      • Designing MLT, understanding and exploiting GxE
      • Different Covariance Structures, Genetic and Phenotypic Correlations
      		 Abhishek, Diariétou
      9:45 AM 10:45 AM ·       Introduction to Analytical Frameworks and Tools

      ·       Result Interpretation of Mixed Models / ANOVA for Selection in standard templates

       

      		 Abhishek, Diariétou
      10:45 AM 11:15 AM Coffee Break
      11:15 AM 1:00 PM BMS Introduction

      • Germplasm Manager
      • Study Management in BMS
      • Genotyping sample procedure in BMS
      • Data QC, Visualization and Data Query in BMS
      • Discussion regarding BMS in the future
      		 Abhishek, Hermann
      1:00 PM 2:00 PM Lunch Hotel
      2:00 PM 3:30 PM EBS Demo

       

      		 Abhishek, Hermann
      3:30 PM 4:00 PM Coffee Break
      4:00 PM 5:00 PM EBS Demo Abhishk, Hermann

       

      Day 3: Moderator Dr Drabo Inoussa
      4 September 2024 (Wednesday)
      From To Session Presenter
      8:30 AM 8:45 AM Recap from Day 2  
        8:45 AM  10:00 AM EBS Demo and discussion on EBS in the future Abhishek, Hermann
      10:00 AM 10:30 AM Coffee Break                                                                    
      10:30 AM 12:30 PM Exploiting Genomic Data: QAQC, MAS Mohan, Jacque
      12:30 PM 1:00 PM Exploiting Genomic Data: QAQC, MAS Mohan, Jacque
      1:00 PM 2:00 PM Lunch Hotel
      2:00 PM 3:30 PM Introduction to R and Advanced Data QC & Visualization

      –   Data Summarization

      –   Tabulation and Data Query

      –   Finding Model Based Outliers

      –   Ggplot2

      		 Abhishek, Diariétou
      3:30 PM 4:00 PM Coffee Break                                                                   
      4:00 PM 5:30 PM Continued… Abhishek
      Day 4: Moderator Mareme Niang Belko
      5 September 2024 (Thursday)
      From To Session Presenter
      8:30 AM 8:45 AM Recap from Day 3  
      8:45 AM 10:15 AM Overview of CGIAR Breeding Analytical Pipeline Abhishek
      10:15 AM 10:45 AM Coffee Break
      10:45 AM 1:00 PM CGIAR Breeding Analytical Pipeline (Hands on) Abhishek
      1:00 PM 2:00 PM Lunch Hotel
      2:00 PM

       

       

      		 3:30 PM CGIAR Breeding Analytical Pipeline (Hands

      on) Contd…

      		 Abhishek
      3:30 PM 4:00 PM Coffee Break Abhishek
      4:00 PM 5:30 PM Participant use CGIAR Breeding Pipeline with their own data

       

      		 Abhishek

       

      Day 5: Moderator Dr Issa Faye
      6 September 2024 (Friday)
      From To Session Presenter
      8:30 AM 8:45 AM Recap from Day 4  
      8:45 AM 10:30 AM Discussion on Genetic Gains Methods of Genetic Gains estimation Discussion on Check Strategy

      Some Practical Examples

      		 Abhishek
      10:30 AM 11:00 AM Coffee Break
      11:00 AM 12:00 PM Use of Selection Indices Abhishek
      12:00 PM 1:00 PM CGIAR Analytical Pipeline for Selection Indices and Genetic Gains Abhishek
      1:00 PM 2:30 PM Lunch                                                              Hotel
      2:30 PM 3:00 PM Presentation from Participants on Data Analysis Done through CGIAR Analytical Pipeline  

      All
      3:00 PM 3:30 PM Continued…  
      3:30 PM 4:00 PM Coffee Break                                                                        
      4:00 PM 4:30 PM Feedback and   Closure All

       

       

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