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27Août
Biometrics, Quantitative Genetics and Data Management Training for Breeding Informatics Working Group A: Senegal 2 – 6 September 2024
Program
| Day 1: Moderator Dr Cyril Diatta | ||||||
| 2 September 2024 (Monday) | ||||||
| From | To | Session | Instructors | |||
| 8:30 AM | 9:00 AM | Meeting Check-in | Mouhamed, Kim | |||
| 9:00 AM | 9:20 AM | Welcome Remarks | CERAAS Director Dr Aliou Faye,
ADCIN/CIMMYT regional coordinator Dr Baloua Nebie, ABEE coordinator Dr Ousmane Ndoye, ILCI-CIWA coordinator Mme Mareme Niang Belko |
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| 9:20 AM | 9:25 AM | Introduction & Objectives Introduction | Aissatou | |||
| 9:25 AM | 9:45 AM | Participants introduction; Network Partner’s
Expectations from Meeting |
All | |||
| 9:45 AM | 10:15 AM | Agro-Physiological Characterization of abiotic stress in Crops | Yves Emendack | |||
| 10:15 AM | 10:30 AM | Coffee Break and Group Photo | Kim/ Aboubakr | |||
| 10:30 AM | 11:30 AM | Breeding objectives of a Breeding Program & Data Driven Decisions | Abhishek | |||
| 11:30 AM | 1:00 PM | Breeders Equation, Genetic Gains, Use of Data Management Systems and Informatics | Abhishek | |||
| 1:00 PM | 2:00 PM | Lunch | Hotel | |||
| 2:00 PM | 2:30 PM | Digital Breeding Philosophy | Abhishek | |||
|
2:30 PM |
3:30 PM |
Introduction to Advanced Experimental Designs
|
Abhishek, Diariétou | |||
| 3:30 PM | 4:00 PM | Coffee Break | ||||
| 4:00 PM | 4:30 PM | · Designing of Experimental Field Trials | Abhishek, Diariétou | |||
| 4:30 PM | 5:00 PM | General Discussion | All
|
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| Day 2: Moderator Dr Richard Oteng-Frimpong | |||
| 3 September 2024 (Tuesday) | |||
| From | To | Session | |
| 8:30 AM | 8:45 AM | Recap from Day 1 | |
| 8:45 AM | 9:45 AM |
|
Abhishek, Diariétou |
| 9:45 AM | 10:45 AM | · Introduction to Analytical Frameworks and Tools
· Result Interpretation of Mixed Models / ANOVA for Selection in standard templates
|
Abhishek, Diariétou |
| 10:45 AM | 11:15 AM | Coffee Break | |
| 11:15 AM | 1:00 PM | BMS Introduction
|
Abhishek, Hermann |
| 1:00 PM | 2:00 PM | Lunch | Hotel |
| 2:00 PM | 3:30 PM | EBS Demo
|
Abhishek, Hermann |
| 3:30 PM | 4:00 PM | Coffee Break | |
| 4:00 PM | 5:00 PM | EBS Demo | Abhishk, Hermann |
| Day 3: Moderator Dr Drabo Inoussa | ||||
| 4 September 2024 (Wednesday) | ||||
| From | To | Session | Presenter | |
| 8:30 AM | 8:45 AM | Recap from Day 2 | ||
| 8:45 AM | 10:00 AM | EBS Demo and discussion on EBS in the future | Abhishek, Hermann | |
| 10:00 AM | 10:30 AM | Coffee Break | ||
| 10:30 AM | 12:30 PM | Exploiting Genomic Data: QAQC, MAS | Mohan, Jacque | |
| 12:30 PM | 1:00 PM | Exploiting Genomic Data: QAQC, MAS | Mohan, Jacque | |
| 1:00 PM | 2:00 PM | Lunch | Hotel | |
| 2:00 PM | 3:30 PM | Introduction to R and Advanced Data QC & Visualization
– Data Summarization – Tabulation and Data Query – Finding Model Based Outliers – Ggplot2 |
Abhishek, Diariétou | |
| 3:30 PM | 4:00 PM | Coffee Break | ||
| 4:00 PM | 5:30 PM | Continued… | Abhishek | |
| Day 4: Moderator Mareme Niang Belko | ||||
| 5 September 2024 (Thursday) | ||||
| From | To | Session | Presenter | |
| 8:30 AM | 8:45 AM | Recap from Day 3 | ||
| 8:45 AM | 10:15 AM | Overview of CGIAR Breeding Analytical Pipeline | Abhishek | |
| 10:15 AM | 10:45 AM | Coffee Break | ||
| 10:45 AM | 1:00 PM | CGIAR Breeding Analytical Pipeline (Hands on) | Abhishek | |
| 1:00 PM | 2:00 PM | Lunch | Hotel | |
| 2:00 PM
|
3:30 PM | CGIAR Breeding Analytical Pipeline (Hands
on) Contd… |
Abhishek | |
| 3:30 PM | 4:00 PM | Coffee Break | Abhishek | |
| 4:00 PM | 5:30 PM | Participant use CGIAR Breeding Pipeline with their own data
|
Abhishek | |
| Day 5: Moderator Dr Issa Faye | ||||
| 6 September 2024 (Friday) | ||||
| From | To | Session | Presenter | |
| 8:30 AM | 8:45 AM | Recap from Day 4 | ||
| 8:45 AM | 10:30 AM | Discussion on Genetic Gains Methods of Genetic Gains estimation Discussion on Check Strategy
Some Practical Examples |
Abhishek | |
| 10:30 AM | 11:00 AM | Coffee Break | ||
| 11:00 AM | 12:00 PM | Use of Selection Indices | Abhishek | |
| 12:00 PM | 1:00 PM | CGIAR Analytical Pipeline for Selection Indices and Genetic Gains | Abhishek | |
| 1:00 PM | 2:30 PM | Lunch Hotel | ||
| 2:30 PM | 3:00 PM | Presentation from Participants on Data Analysis Done through CGIAR Analytical Pipeline |
All |
|
| 3:00 PM | 3:30 PM | Continued… | ||
| 3:30 PM | 4:00 PM | Coffee Break | ||
| 4:00 PM | 4:30 PM | Feedback and Closure | All | |